Publications

Explore our latest research by browsing pre-prints and accepted papers.

Accepted papers

  1. Chao Zhou, Tom Jacobs, Advait Gadhikar, and Rebekka Burkholz
    In The Thirty-ninth Annual Conference on Neural Information Processing Systems, 2025
  2. Advait Gadhikar, Tom Jacobs, Chao Zhou, and Rebekka Burkholz
    In The Thirty-ninth Annual Conference on Neural Information Processing Systems, 2025
  3. Hoang Pham, The-Anh Ta, Tom Jacobs, Rebekka Burkholz, and Long Tran-Thanh
    In The Thirty-ninth Annual Conference on Neural Information Processing Systems, 2025
  4. Tom Jacobs, Chao Zhou, and Rebekka Burkholz
    In Forty-second International Conference on Machine Learning, 2025
  5. Tom Jacobs, and Rebekka Burkholz
    In The Thirteenth International Conference on Learning Representations, 2025
  6. Celia Rubio-Madrigal, Adarsh Jamadandi, and Rebekka Burkholz
    In The Thirteenth International Conference on Learning Representations, 2025
  7. Adarsh Jamadandi, Celia Rubio-Madrigal, and Rebekka Burkholz
    In Thirty-eighth Conference on Neural Information Processing Systems, 2024
  8. Nimrah Mustafa, and Rebekka Burkholz
    In Thirty-eighth Annual Conference on Neural Information Processing Systems, 2024
  9. Intekhab Hossain, Jonas Fischer, Rebekka Burkholz, and John Quackenbush
    In Thirty-eighth Conference on Neural Information Processing Systems, 2024
  10. Intekhab Hossain, Viola Fanfani, Jonas Fischer, John Quackenbush, and Rebekka Burkholz
    Genome Biology, May 2024
  11. Shiwei Liu, Kai Han, Adriana Fernandez-Lopez, Ajay Kumar Jaiswal, Zahra Atashgahi, Boqian Wu, Edoardo Ponti, Callie Hao, Rebekka Burkholz, Olga Saukh, Lu Yin, Andreas Zinonos, Tianjin Huang, Jared Tanner, and Yunhe Wang
    In NeurIPS 2024 Competition Track, 2024
  12. Nimrah Mustafa, and Rebekka Burkholz
    In Forty-first International Conference on Machine Learning, 2024
  13. Advait Harshal Gadhikar, and Rebekka Burkholz
    In The Twelfth International Conference on Learning Representations, 2024
  14. Rebekka Burkholz
    In The Twelfth International Conference on Learning Representations, 2024
  15. Nimrah Mustafa, Aleksandar Bojchevski, and Rebekka Burkholz
    In Thirty-seventh Conference on Neural Information Processing Systems, 2023
  16. Advait Harshal Gadhikar, Sohom Mukherjee, and Rebekka Burkholz
    In Proceedings of the 40th International Conference on Machine Learning, 2023
  17. Marouen Ben Guebila, Tian Wang, Camila M. Lopes-Ramos, Viola Fanfani, Des Weighill, Rebekka Burkholz, Daniel Schlauch, Joseph N. Paulson, Michael Altenbuchinger, Katherine H. Shutta, Abhijeet R. Sonawane, James Lim, Genis Calderer, David G.P. IJzendoorn, Daniel Morgan, Alessandro Marin, Cho-Yi Chen, Qi Song, Enakshi Saha, Dawn L. DeMeo, Megha Padi, John Platig, Marieke L. Kuijjer, Kimberly Glass, and John Quackenbush
    Genome Biology, 2023
  18. Katherine H Shutta, Deborah Weighill, Rebekka Burkholz, Marouen Ben Guebila, Dawn L DeMeo, Helena U Zacharias, John Quackenbush, and Michael Altenbuchinger
    Nucleic Acids Research, 2022
  19. Rebekka Burkholz
    In Advances in Neural Information Processing Systems, 2022
  20. Rebekka Burkholz
    In Proceedings of the 39th International Conference on Machine Learning, 2022
  21. Marouen Ben Guebila, Deborah Weighill, Camila M. Lopes-Ramos, Rebekka Burkholz, Romana T. Pop, Kalyan Palepu, Mia Shapoval, Maud Fagny, Daniel Schlauch, Kimberly Glass, Michael Altenbuchinger, Marieke L. Kuijjer, John Platig, and John Quackenbush
    Nature Methods, 2022
  22. Jonas Fischer, and Rebekka Burkholz
    In The Tenth International Conference on Learning Representations, 2022
  23. Rebekka Burkholz, Nilanjana Laha, Rajarshi Mukherjee, and Alkis Gotovos
    In The Tenth International Conference on Learning Representations, 2022

Pre-prints

  1. Tom Jacobs, Advait Gadhikar, Celia Rubio-Madrigal, and Rebekka Burkholz
    Pre-print on arXiv, 2025
  2. Abbavaram Gowtham Reddy, Celia Rubio-Madrigal, Rebekka Burkholz, and Krikamol Muandet
    Pre-print on arXiv, 2025
  3. Advait Gadhikar, Sree Harsha Nelaturu, and Rebekka Burkholz
    Pre-print on arXiv, 2024
  4. Jonas Fischer, Advait Gadhikar, and Rebekka Burkholz
    Pre-print on arXiv, 2022